yes, I have commands assigned to both joysticks, and I'm not using TARGET or any other software, just DCS (game) and VA.
there are no toggle switches in the commands.
Yes I usually use VAICOM plugins, I tried to disable all the plugins but the same problem happened again.
everything works fine if I close the app, open it again, and assign the second joystick again.
in the picture below, the test joystick buttons not showing any press from joystick 2 only the first one.